IL_6GZ5_055

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCGAG*CCGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_055 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.2983

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6GZ5|1|A2|C|1413
6GZ5|1|A2|C|1414
6GZ5|1|A2|G|1415
6GZ5|1|A2|A|1416
6GZ5|1|A2|G|1417
*
6GZ5|1|A2|C|1432
6GZ5|1|A2|C|1433
6GZ5|1|A2|G|1434
6GZ5|1|A2|A|1435
6GZ5|1|A2|G|1436

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AQ

ribosomal protein eL18