IL_6GZ5_056

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

6GZ5|1|A2|A|1479

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_056 not in the Motif Atlas

Homologous match to IL_8C3A_026

Geometric discrepancy: 0.0928

The information below is about IL_8C3A_026

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6GZ5|1|A2|C|1449
6GZ5|1|A2|C|1450
*
6GZ5|1|A2|G|1478
6GZ5|1|A2|A|1479
6GZ5|1|A2|G|1480

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AQ

ribosomal protein eL18

Chain Aa

ribosomal protein uL15

Chain Ab

ribosomal protein eL29