IL_6GZ5_081

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGC*GG

Length

5 nucleotides

Bulged bases

6GZ5|1|A2|G|1900

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_081 not in the Motif Atlas

Geometric match to IL_7D7V_002

Geometric discrepancy: 0.3982

The information below is about IL_7D7V_002

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

6GZ5|1|A2|U|1899
6GZ5|1|A2|G|1900
6GZ5|1|A2|C|1901
*
6GZ5|1|A2|G|2044
6GZ5|1|A2|G|2045

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AF

ribosomal protein uL30

Chain AM

ribosomal protein eL14

Chain AO

ribosomal protein uL13

Chain AS

ribosomal protein eL20

Chain Af

ribosomal protein eL33