IL_6GZ5_128

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

6GZ5|1|A2|G|4145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_128 not in the Motif Atlas

Homologous match to IL_8C3A_100

Geometric discrepancy: 0.1417

The information below is about IL_8C3A_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

6GZ5|1|A2|U|3898
6GZ5|1|A2|A|3899
6GZ5|1|A2|G|3900
*
6GZ5|1|A2|U|4143
6GZ5|1|A2|G|4144
6GZ5|1|A2|G|4145
6GZ5|1|A2|G|4146

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AA

ribosomal protein uL2

Chain AN

ribosomal protein eL15

Chain Ao

ribosomal protein eL42

Chain Bw

Transfer RNA; tRNA