IL_6GZ5_133
3D structure
- PDB id
- 6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GUGAGGC*GCUC
- Length
- 11 nucleotides
- Bulged bases
- 6GZ5|1|A2|G|4054, 6GZ5|1|A2|C|4124, 6GZ5|1|A2|U|4125
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZ5_133 not in the Motif Atlas
- Homologous match to IL_8C3A_106
- Geometric discrepancy: 0.2938
- The information below is about IL_8C3A_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
6GZ5|1|A2|G|4052
6GZ5|1|A2|U|4053
6GZ5|1|A2|G|4054
6GZ5|1|A2|A|4055
6GZ5|1|A2|G|4056
6GZ5|1|A2|G|4057
6GZ5|1|A2|C|4058
*
6GZ5|1|A2|G|4123
6GZ5|1|A2|C|4124
6GZ5|1|A2|U|4125
6GZ5|1|A2|C|4126
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain A3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AA
- ribosomal protein uL2
- Chain AG
- ribosomal protein eL8
- Chain AX
- ribosomal protein uL23
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