IL_6GZ5_144

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_144 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1578

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6GZ5|1|A2|C|4374
6GZ5|1|A2|C|4375
6GZ5|1|A2|A|4376
6GZ5|1|A2|A|4377
6GZ5|1|A2|G|4378
*
6GZ5|1|A2|C|4388
6GZ5|1|A2|G|4389
6GZ5|1|A2|A|4390
6GZ5|1|A2|C|4391
6GZ5|1|A2|G|4392

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AI

ribosomal protein uL16

Chain Am

ribosomal protein eL40