IL_6GZ5_157

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_157 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.1745

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

6GZ5|1|A2|U|4600
6GZ5|1|A2|G|4601
6GZ5|1|A2|C|4602
*
6GZ5|1|A2|G|4621
6GZ5|1|A2|G|4622
6GZ5|1|A2|G|4623

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AW

ribosomal protein eL24

Chain Ad

ribosomal protein eL31