IL_6GZ5_171

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCA*UC

Length

5 nucleotides

Bulged bases

6GZ5|1|A2|C|4971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_171 not in the Motif Atlas

Homologous match to IL_8C3A_140

Geometric discrepancy: 0.3076

The information below is about IL_8C3A_140

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6GZ5|1|A2|G|4970
6GZ5|1|A2|C|4971
6GZ5|1|A2|A|4972
*
6GZ5|1|A2|U|4993
6GZ5|1|A2|C|4994

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AW

ribosomal protein eL24