IL_6GZ5_183

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAAA*UGACG

Length

9 nucleotides

Bulged bases

6GZ5|1|B1|A|516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_183 not in the Motif Atlas

Geometric match to IL_4WF9_016

Geometric discrepancy: 0.3467

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6GZ5|1|B1|C|37
6GZ5|1|B1|A|38
6GZ5|1|B1|A|39
6GZ5|1|B1|A|40
*
6GZ5|1|B1|U|514
6GZ5|1|B1|G|515
6GZ5|1|B1|A|516
6GZ5|1|B1|C|517
6GZ5|1|B1|G|518

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BE

ribosomal protein eS4

Chain BJ

ribosomal protein uS4