IL_6GZ5_190

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCCUUU*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_190 not in the Motif Atlas

Homologous match to IL_4V88_393

Geometric discrepancy: 0.2358

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

6GZ5|1|B1|U|116
6GZ5|1|B1|C|117
6GZ5|1|B1|C|118
6GZ5|1|B1|U|119
6GZ5|1|B1|U|120
6GZ5|1|B1|U|121
*
6GZ5|1|B1|A|343
6GZ5|1|B1|U|344
6GZ5|1|B1|U|345
6GZ5|1|B1|C|346
6GZ5|1|B1|G|347

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BE

ribosomal protein eS4

Chain BI

ribosomal protein eS8