IL_6GZ5_193

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_193 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.2956

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6GZ5|1|B1|C|188
6GZ5|1|B1|U|189
6GZ5|1|B1|G|190
6GZ5|1|B1|A|191
6GZ5|1|B1|C|192
*
6GZ5|1|B1|G|207
6GZ5|1|B1|G|208
6GZ5|1|B1|A|209
6GZ5|1|B1|U|210
6GZ5|1|B1|G|211

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BI

ribosomal protein eS8