IL_6GZ5_205

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_205 not in the Motif Atlas

Geometric match to IL_5C5W_003

Geometric discrepancy: 0.253

The information below is about IL_5C5W_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

52

Unit IDs

6GZ5|1|B1|U|566
6GZ5|1|B1|C|567
6GZ5|1|B1|C|568
6GZ5|1|B1|A|569
*
6GZ5|1|B1|U|581
6GZ5|1|B1|U|582
6GZ5|1|B1|A|583
6GZ5|1|B1|A|584

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BJ

ribosomal protein uS4

Chain BY

ribosomal protein eS24