IL_6GZ5_218
3D structure
- PDB id
- 6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AG*CAUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZ5_218 not in the Motif Atlas
- Geometric match to IL_4V88_428
- Geometric discrepancy: 0.1389
- The information below is about IL_4V88_428
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_50694.4
- Basepair signature
- cWW-cWW-tSH-cWW-R
- Number of instances in this motif group
- 28
Unit IDs
6GZ5|1|B1|A|922
6GZ5|1|B1|G|923
*
6GZ5|1|B1|C|1019
6GZ5|1|B1|A|1020
6GZ5|1|B1|U|1021
6GZ5|1|B1|U|1022
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain BH
- ribosomal protein eS7
- Chain BN
- ribosomal protein uS15
- Chain BW
- ribosomal protein uS8
- Chain Bb
- ribosomal protein eS27
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