IL_6GZ5_224
3D structure
- PDB id
- 6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AGGUUC*GUU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZ5_224 not in the Motif Atlas
- Geometric match to IL_4V88_435
- Geometric discrepancy: 0.2371
- The information below is about IL_4V88_435
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_22046.1
- Basepair signature
- cWW-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6GZ5|1|B1|A|1042
6GZ5|1|B1|G|1043
6GZ5|1|B1|G|1044
6GZ5|1|B1|U|1045
6GZ5|1|B1|U|1046
6GZ5|1|B1|C|1047
*
6GZ5|1|B1|G|1071
6GZ5|1|B1|U|1072
6GZ5|1|B1|U|1073
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain AA
- ribosomal protein uL2
- Chain Ap
- ribosomal protein eL43
- Chain BO
- ribosomal protein uS11
- Chain Ba
- ribosomal protein eS26
Coloring options: