IL_6GZ5_228

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_228 not in the Motif Atlas

Geometric match to IL_1MFQ_003

Geometric discrepancy: 0.2586

The information below is about IL_1MFQ_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6GZ5|1|B1|U|1101
6GZ5|1|B1|G|1102
6GZ5|1|B1|C|1103
*
6GZ5|1|B1|G|1129
6GZ5|1|B1|G|1130
6GZ5|1|B1|G|1131

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BB

ribosomal protein eS1

Chain BN

ribosomal protein uS15

Chain Ba

ribosomal protein eS26

Chain Bb

ribosomal protein eS27