IL_6GZ5_232

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGA*UU

Length

5 nucleotides

Bulged bases

6GZ5|1|B1|G|1207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_232 not in the Motif Atlas

Homologous match to IL_4V88_442

Geometric discrepancy: 0.2406

The information below is about IL_4V88_442

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

6GZ5|1|B1|G|1206
6GZ5|1|B1|G|1207
6GZ5|1|B1|A|1208
*
6GZ5|1|B1|U|1691
6GZ5|1|B1|U|1692

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain Ba

ribosomal protein eS26

Chain Bx

mRNA