IL_6GZ5_234
3D structure
- PDB id
- 6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CCU*GCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZ5_234 not in the Motif Atlas
- Homologous match to IL_4V88_444
- Geometric discrepancy: 0.1308
- The information below is about IL_4V88_444
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
6GZ5|1|B1|C|1230
6GZ5|1|B1|C|1231
6GZ5|1|B1|U|1232
*
6GZ5|1|B1|G|1526
6GZ5|1|B1|C|1527
6GZ5|1|B1|G|1528
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain BQ
- ribosomal protein uS9
- Chain BS
- ribosomal protein uS13
- Chain BT
- ribosomal protein eS19
- Chain BU
- ribosomal protein uS10
- Chain Bv
- Transfer RNA; tRNA
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