IL_6GZ5_235
3D structure
- PDB id
- 6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GG*CAC
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZ5_235 not in the Motif Atlas
- Homologous match to IL_4V88_445
- Geometric discrepancy: 0.2712
- The information below is about IL_4V88_445
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_18604.1
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 46
Unit IDs
6GZ5|1|B1|G|1235
6GZ5|1|B1|G|1236
*
6GZ5|1|B1|C|1521
6GZ5|1|B1|A|1522
6GZ5|1|B1|C|1523
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain BP
- ribosomal protein uS19
- Chain BQ
- ribosomal protein uS9
- Chain BS
- ribosomal protein uS13
- Chain BZ
- ribosomal protein eS25
- Chain Bf
- ribosomal protein eS31
- Chain Bv
- Transfer RNA; tRNA
- Chain Ct
- eukaryotic elongation factor 2 (eEF2)
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