IL_6GZ5_237

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GACAGGAUUG*CUCGAUUC

Length

18 nucleotides

Bulged bases

6GZ5|1|B1|G|1285, 6GZ5|1|B1|G|1286

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ5|1|B1|G|1281
6GZ5|1|B1|A|1282
6GZ5|1|B1|C|1283
6GZ5|1|B1|A|1284
6GZ5|1|B1|G|1285
6GZ5|1|B1|G|1286
6GZ5|1|B1|A|1287
6GZ5|1|B1|U|1288
6GZ5|1|B1|U|1289
6GZ5|1|B1|G|1290
*
6GZ5|1|B1|C|1309
6GZ5|1|B1|U|1310
6GZ5|1|B1|C|1311
6GZ5|1|B1|G|1312
6GZ5|1|B1|A|1313
6GZ5|1|B1|U|1314
6GZ5|1|B1|U|1315
6GZ5|1|B1|C|1316

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BK

ribosomal protein eS10

Chain BM

ribosomal protein eS12

Chain Bd

ribosomal protein uS14

Chain Bf

ribosomal protein eS31