IL_6GZ5_250

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUGCCUACC*GUAACC

Length

15 nucleotides

Bulged bases

6GZ5|1|B1|C|1553, 6GZ5|1|B1|C|1554, 6GZ5|1|B1|A|1580, 6GZ5|1|B1|C|1581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ5|1|B1|G|1550
6GZ5|1|B1|U|1551
6GZ5|1|B1|G|1552
6GZ5|1|B1|C|1553
6GZ5|1|B1|C|1554
6GZ5|1|B1|U|1555
6GZ5|1|B1|A|1556
6GZ5|1|B1|C|1557
6GZ5|1|B1|C|1558
*
6GZ5|1|B1|G|1577
6GZ5|1|B1|U|1578
6GZ5|1|B1|A|1579
6GZ5|1|B1|A|1580
6GZ5|1|B1|C|1581
6GZ5|1|B1|C|1582

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BD

ribosomal protein uS3

Chain BK

ribosomal protein eS10

Chain BQ

ribosomal protein uS9

Chain BU

ribosomal protein uS10

Chain Bd

ribosomal protein uS14