IL_6GZ5_277

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

6GZ5|1|A2|G|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_277 not in the Motif Atlas

Homologous match to IL_8C3A_484

Geometric discrepancy: 0.1416

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

6GZ5|1|A2|G|2826
6GZ5|1|A2|G|2827
6GZ5|1|A2|A|2828
6GZ5|1|A2|A|2829
6GZ5|1|A2|G|2830
6GZ5|1|A2|U|2831
6GZ5|1|A2|C|2832
6GZ5|1|A2|G|2833
6GZ5|1|A2|G|2834
*
6GZ5|1|A2|C|3808
6GZ5|1|A2|U|3809
6GZ5|1|A2|G|3810
6GZ5|1|A2|U|3811
6GZ5|1|A2|C|3812

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AB

ribosomal protein uL3

Chain AV

ribosomal protein uL14