IL_6GZ5_279

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGCCAUG*CAGGCGGA

Length

15 nucleotides

Bulged bases

6GZ5|1|A2|C|4682

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ5|1|A2|U|4542
6GZ5|1|A2|G|4543
6GZ5|1|A2|C|4544
6GZ5|1|A2|C|4545
6GZ5|1|A2|A|4546
6GZ5|1|A2|U|4547
6GZ5|1|A2|G|4548
*
6GZ5|1|A2|C|4678
6GZ5|1|A2|A|4679
6GZ5|1|A2|G|4680
6GZ5|1|A2|G|4681
6GZ5|1|A2|C|4682
6GZ5|1|A2|G|4683
6GZ5|1|A2|G|4684
6GZ5|1|A2|A|4685

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AB

ribosomal protein uL3

Chain AO

ribosomal protein uL13