IL_6GZQ_006

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CUGAGUAG*CGAAAGG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_006 not in the Motif Atlas

Homologous match to IL_4WF9_009

Geometric discrepancy: 0.1436

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6GZQ|1|A1|C|228
6GZQ|1|A1|U|229
6GZQ|1|A1|G|230
6GZQ|1|A1|A|231
6GZQ|1|A1|G|232
6GZQ|1|A1|U|233
6GZQ|1|A1|A|234
6GZQ|1|A1|G|235
*
6GZQ|1|A1|C|243
6GZQ|1|A1|G|244
6GZQ|1|A1|A|245
6GZQ|1|A1|A|246
6GZQ|1|A1|A|247
6GZQ|1|A1|G|248
6GZQ|1|A1|G|249

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain K1

50S ribosomal protein L15

Chain d1

50S ribosomal protein L35