IL_6GZQ_007

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GGC*GUAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_007 not in the Motif Atlas

Geometric match to IL_6DME_003

Geometric discrepancy: 0.3189

The information below is about IL_6DME_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.1

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

10

Unit IDs

6GZQ|1|A1|G|292
6GZQ|1|A1|G|293
6GZQ|1|A1|C|294
*
6GZQ|1|A1|G|392
6GZQ|1|A1|U|393
6GZQ|1|A1|A|394
6GZQ|1|A1|C|395

Current chains

Chain A1

23S ribosomal RNA

Nearby chains