IL_6GZQ_019

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGC*GGAG

Length

7 nucleotides

Bulged bases

6GZQ|1|A1|G|979

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_019 not in the Motif Atlas

Homologous match to IL_7RQB_025

Geometric discrepancy: 0.304

The information below is about IL_7RQB_025

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6GZQ|1|A1|C|893
6GZQ|1|A1|G|894
6GZQ|1|A1|C|895
*
6GZQ|1|A1|G|978
6GZQ|1|A1|G|979
6GZQ|1|A1|A|980
6GZQ|1|A1|G|981

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain Y1

50S ribosomal protein L30