IL_6GZQ_020

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CUGAC*GGUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_020 not in the Motif Atlas

Geometric match to IL_7RQB_026

Geometric discrepancy: 0.16

The information below is about IL_7RQB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_94165.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6GZQ|1|A1|C|895
6GZQ|1|A1|U|896
6GZQ|1|A1|G|897
6GZQ|1|A1|A|898
6GZQ|1|A1|C|899
*
6GZQ|1|A1|G|975
6GZQ|1|A1|G|976
6GZQ|1|A1|U|977
6GZQ|1|A1|G|978

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain Y1

50S ribosomal protein L30