IL_6GZQ_021
3D structure
- PDB id
- 6GZQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- CUGUAG*CGAAGG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZQ_021 not in the Motif Atlas
- Geometric match to IL_7A0S_027
- Geometric discrepancy: 0.1983
- The information below is about IL_7A0S_027
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_81631.1
- Basepair signature
- cWW-L-R-cSH-R-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
6GZQ|1|A1|C|906
6GZQ|1|A1|U|907
6GZQ|1|A1|G|908
6GZQ|1|A1|U|909
6GZQ|1|A1|A|910
6GZQ|1|A1|G|911
*
6GZQ|1|A1|C|963
6GZQ|1|A1|G|964
6GZQ|1|A1|A|965
6GZQ|1|A1|A|966
6GZQ|1|A1|G|967
6GZQ|1|A1|G|968
Current chains
- Chain A1
- 23S ribosomal RNA
Nearby chains
- Chain B1
- 5S ribosomal RNA; 5S rRNA
- Chain L1
- 50S ribosomal protein L16
- Chain U1
- 50S ribosomal protein L25
- Chain V1
- 50S ribosomal protein L27
- Chain Y1
- 50S ribosomal protein L30
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