3D structure

PDB id
6GZQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
T. thermophilus hibernating 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.28 Å

Loop

Sequence
CUGUAG*CGAAGG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6GZQ_021 not in the Motif Atlas
Geometric match to IL_7A0S_027
Geometric discrepancy: 0.1983
The information below is about IL_7A0S_027
Detailed Annotation
5x5 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_81631.1
Basepair signature
cWW-L-R-cSH-R-R-L-R-cWW
Number of instances in this motif group
2

Unit IDs

6GZQ|1|A1|C|906
6GZQ|1|A1|U|907
6GZQ|1|A1|G|908
6GZQ|1|A1|U|909
6GZQ|1|A1|A|910
6GZQ|1|A1|G|911
*
6GZQ|1|A1|C|963
6GZQ|1|A1|G|964
6GZQ|1|A1|A|965
6GZQ|1|A1|A|966
6GZQ|1|A1|G|967
6GZQ|1|A1|G|968

Current chains

Chain A1
23S ribosomal RNA

Nearby chains

Chain B1
5S ribosomal RNA; 5S rRNA
Chain L1
50S ribosomal protein L16
Chain U1
50S ribosomal protein L25
Chain V1
50S ribosomal protein L27
Chain Y1
50S ribosomal protein L30

Coloring options:


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