IL_6GZQ_024

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GCUAGG*CCAAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_024 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.5222

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6GZQ|1|A1|G|924
6GZQ|1|A1|C|925
6GZQ|1|A1|U|926
6GZQ|1|A1|A|927
6GZQ|1|A1|G|928
6GZQ|1|A1|G|929
*
6GZQ|1|A1|C|945
6GZQ|1|A1|C|946
6GZQ|1|A1|A|947
6GZQ|1|A1|A|948
6GZQ|1|A1|A|949
6GZQ|1|A1|C|950

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain L1

50S ribosomal protein L16

Chain U1

50S ribosomal protein L25