3D structure

PDB id
6GZQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
T. thermophilus hibernating 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.28 Å

Loop

Sequence
GUC*GC
Length
5 nucleotides
Bulged bases
6GZQ|1|A1|U|1060
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6GZQ_029 not in the Motif Atlas
Geometric match to IL_5J7L_279
Geometric discrepancy: 0.2386
The information below is about IL_5J7L_279
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_89505.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
117

Unit IDs

6GZQ|1|A1|G|1059
6GZQ|1|A1|U|1060
6GZQ|1|A1|C|1061
*
6GZQ|1|A1|G|1197
6GZQ|1|A1|C|1198

Current chains

Chain A1
23S ribosomal RNA

Nearby chains

Chain I1
50S ribosomal protein L13
Chain P1
50S ribosomal protein L20

Coloring options:


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