IL_6GZQ_030

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

6GZQ|1|A1|U|1189

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_030 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.2164

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

6GZQ|1|A1|C|1066
6GZQ|1|A1|U|1067
6GZQ|1|A1|A|1068
6GZQ|1|A1|A|1069
6GZQ|1|A1|G|1070
6GZQ|1|A1|U|1071
6GZQ|1|A1|G|1072
*
6GZQ|1|A1|C|1187
6GZQ|1|A1|U|1188
6GZQ|1|A1|U|1189
6GZQ|1|A1|A|1190
6GZQ|1|A1|A|1191
6GZQ|1|A1|G|1192

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain G1

50S ribosomal protein L6

Chain I1

50S ribosomal protein L13

Chain e1

50S ribosomal protein L36