IL_6GZQ_035

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGAUG*UAAG

Length

9 nucleotides

Bulged bases

6GZQ|1|A1|U|1252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_035 not in the Motif Atlas

Homologous match to IL_7RQB_046

Geometric discrepancy: 0.3614

The information below is about IL_7RQB_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.2

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6GZQ|1|A1|C|1249
6GZQ|1|A1|G|1250
6GZQ|1|A1|A|1251
6GZQ|1|A1|U|1252
6GZQ|1|A1|G|1253
*
6GZQ|1|A1|U|1288
6GZQ|1|A1|A|1289
6GZQ|1|A1|A|1290
6GZQ|1|A1|G|1291

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain E1

50S ribosomal protein L4

Chain K1

50S ribosomal protein L15