IL_6GZQ_038
3D structure
- PDB id
- 6GZQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- AUGAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZQ_038 not in the Motif Atlas
- Homologous match to IL_7RQB_049
- Geometric discrepancy: 0.1201
- The information below is about IL_7RQB_049
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.7
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6GZQ|1|A1|A|1310
6GZQ|1|A1|U|1311
6GZQ|1|A1|G|1312
6GZQ|1|A1|A|1313
6GZQ|1|A1|G|1314
6GZQ|1|A1|U|1315
6GZQ|1|A1|A|1316
6GZQ|1|A1|A|1317
*
6GZQ|1|A1|U|2035
6GZQ|1|A1|G|2036
6GZQ|1|A1|A|2037
6GZQ|1|A1|A|2038
6GZQ|1|A1|A|2039
6GZQ|1|A1|U|2040
6GZQ|1|A1|U|2041
Current chains
- Chain A1
- 23S ribosomal RNA
Nearby chains
- Chain E1
- 50S ribosomal protein L4
- Chain R1
- 50S ribosomal protein L22
- Chain a1
- 50S ribosomal protein L32
Coloring options: