IL_6GZQ_047

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

6GZQ|1|A1|A|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_047 not in the Motif Atlas

Geometric match to IL_7RQB_059

Geometric discrepancy: 0.2368

The information below is about IL_7RQB_059

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

6GZQ|1|A1|C|1500
6GZQ|1|A1|C|1501
*
6GZQ|1|A1|G|1508
6GZQ|1|A1|A|1509
6GZQ|1|A1|G|1510

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain M1

50S ribosomal protein L17