IL_6GZQ_048

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_048 not in the Motif Atlas

Homologous match to IL_7RQB_060

Geometric discrepancy: 0.1718

The information below is about IL_7RQB_060

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_07235.1

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6GZQ|1|A1|A|1518
6GZQ|1|A1|G|1519
6GZQ|1|A1|A|1520
6GZQ|1|A1|A|1521
6GZQ|1|A1|G|1522
*
6GZQ|1|A1|U|1568
6GZQ|1|A1|G|1569
6GZQ|1|A1|G|1570
6GZQ|1|A1|U|1571

Current chains

Chain A1

23S ribosomal RNA

Nearby chains