IL_6GZQ_051

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_051 not in the Motif Atlas

Homologous match to IL_7RQB_064

Geometric discrepancy: 0.163

The information below is about IL_7RQB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.2

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6GZQ|1|A1|G|1700
6GZQ|1|A1|A|1701
6GZQ|1|A1|G|1702
6GZQ|1|A1|A|1703
6GZQ|1|A1|A|1704
6GZQ|1|A1|C|1705
*
6GZQ|1|A1|G|2028
6GZQ|1|A1|A|2029
6GZQ|1|A1|C|2030

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L3

Chain M1

50S ribosomal protein L17