IL_6GZQ_054

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6GZQ|1|A1|G|1748

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_054 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.1628

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6GZQ|1|A1|C|1735
6GZQ|1|A1|G|1736
6GZQ|1|A1|U|1737
6GZQ|1|A1|A|1738
6GZQ|1|A1|A|1739
6GZQ|1|A1|C|1740
*
6GZQ|1|A1|G|1745
6GZQ|1|A1|G|1746
6GZQ|1|A1|A|1747
6GZQ|1|A1|G|1748
6GZQ|1|A1|A|1749
6GZQ|1|A1|A|1750
6GZQ|1|A1|G|1751

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain C1

50S ribosomal protein L2