IL_6GZQ_056

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

6GZQ|1|A1|G|1834, 6GZQ|1|A1|G|1849, 6GZQ|1|A1|U|1853

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_056 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.1398

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6GZQ|1|A1|U|1831
6GZQ|1|A1|G|1832
6GZQ|1|A1|C|1833
6GZQ|1|A1|G|1834
6GZQ|1|A1|A|1835
6GZQ|1|A1|A|1836
6GZQ|1|A1|C|1837
*
6GZQ|1|A1|G|1846
6GZQ|1|A1|G|1847
6GZQ|1|A1|A|1848
6GZQ|1|A1|G|1849
6GZQ|1|A1|G|1850
6GZQ|1|A1|U|1851
6GZQ|1|A1|A|1852
6GZQ|1|A1|U|1853
6GZQ|1|A1|A|1854

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain C1

50S ribosomal protein L2