IL_6GZQ_080

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

6GZQ|1|A1|A|2556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_080 not in the Motif Atlas

Homologous match to IL_7A0S_091

Geometric discrepancy: 0.1688

The information below is about IL_7A0S_091

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_02555.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

6GZQ|1|A1|U|2536
6GZQ|1|A1|G|2537
*
6GZQ|1|A1|C|2554
6GZQ|1|A1|A|2555
6GZQ|1|A1|A|2556
6GZQ|1|A1|G|2557

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain I1

50S ribosomal protein L13

Chain e1

50S ribosomal protein L36