IL_6GZQ_087

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

6GZQ|1|A1|A|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_087 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.1263

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6GZQ|1|A1|G|2752
6GZQ|1|A1|A|2753
6GZQ|1|A1|U|2754
6GZQ|1|A1|A|2755
6GZQ|1|A1|A|2756
6GZQ|1|A1|C|2757
*
6GZQ|1|A1|G|2777
6GZQ|1|A1|G|2778
6GZQ|1|A1|A|2779
6GZQ|1|A1|A|2780
6GZQ|1|A1|G|2781
6GZQ|1|A1|C|2782

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain G1

50S ribosomal protein L6

Chain I1

50S ribosomal protein L13

Chain e1

50S ribosomal protein L36