IL_6GZQ_104

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GCAAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_104 not in the Motif Atlas

Homologous match to IL_4LFB_015

Geometric discrepancy: 0.1731

The information below is about IL_4LFB_015

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_75255.1

Basepair signature

cWW-cSH-cWS-cSH-tWH-cWW

Number of instances in this motif group

8

Unit IDs

6GZQ|1|A2|G|366
6GZQ|1|A2|C|367
6GZQ|1|A2|A|368
6GZQ|1|A2|A|369
6GZQ|1|A2|U|370
*
6GZQ|1|A2|A|384
6GZQ|1|A2|C|385

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain P2

30S ribosomal protein S16