IL_6GZQ_106

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

6GZQ|1|A2|A|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_106 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1675

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6GZQ|1|A2|G|404
6GZQ|1|A2|G|405
6GZQ|1|A2|A|406
6GZQ|1|A2|A|407
6GZQ|1|A2|G|408
6GZQ|1|A2|A|409
6GZQ|1|A2|A|410
6GZQ|1|A2|G|411
*
6GZQ|1|A2|U|422
6GZQ|1|A2|G|423
6GZQ|1|A2|U|424
6GZQ|1|A2|A|425
6GZQ|1|A2|A|426
6GZQ|1|A2|A|427
6GZQ|1|A2|C|428

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain D2

30S ribosomal protein S4