IL_6GZQ_108

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GAAACCC*GGACUGAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_108 not in the Motif Atlas

Homologous match to IL_6CZR_131

Geometric discrepancy: 0.188

The information below is about IL_6CZR_131

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30149.1

Basepair signature

cWW-L-R-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6GZQ|1|A2|G|444
6GZQ|1|A2|A|445
6GZQ|1|A2|A|446
6GZQ|1|A2|A|447
6GZQ|1|A2|C|448
6GZQ|1|A2|C|449
6GZQ|1|A2|C|450
*
6GZQ|1|A2|G|460
6GZQ|1|A2|G|461
6GZQ|1|A2|A|462
6GZQ|1|A2|C|463
6GZQ|1|A2|U|464
6GZQ|1|A2|G|465
6GZQ|1|A2|A|466
6GZQ|1|A2|C|467

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain P2

30S ribosomal protein S16