IL_6GZQ_109

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGGCCAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_109 not in the Motif Atlas

Homologous match to IL_4LFB_020

Geometric discrepancy: 0.1623

The information below is about IL_4LFB_020

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

6GZQ|1|A2|C|487
6GZQ|1|A2|G|488
6GZQ|1|A2|G|489
6GZQ|1|A2|C|490
6GZQ|1|A2|C|491
6GZQ|1|A2|A|492
6GZQ|1|A2|A|493
6GZQ|1|A2|C|494
*
6GZQ|1|A2|G|523
6GZQ|1|A2|G|524

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain D2

30S ribosomal protein S4

Chain E2

30S ribosomal protein S5

Chain L2

30S ribosomal protein S12