IL_6GZQ_117

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

6GZQ|1|A2|A|685

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_117 not in the Motif Atlas

Homologous match to IL_6CZR_143

Geometric discrepancy: 0.2099

The information below is about IL_6CZR_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37722.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

2

Unit IDs

6GZQ|1|A2|G|666
6GZQ|1|A2|A|667
6GZQ|1|A2|G|668
6GZQ|1|A2|U|669
6GZQ|1|A2|A|670
6GZQ|1|A2|G|671
*
6GZQ|1|A2|C|682
6GZQ|1|A2|G|683
6GZQ|1|A2|C|684
6GZQ|1|A2|A|685
6GZQ|1|A2|G|686
6GZQ|1|A2|A|687
6GZQ|1|A2|U|688
6GZQ|1|A2|A|689
6GZQ|1|A2|C|690

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain K2

30S ribosomal protein S11