IL_6GZQ_119
3D structure
- PDB id
- 6GZQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- CAAACC*GGGUAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZQ_119 not in the Motif Atlas
- Geometric match to IL_3LQX_002
- Geometric discrepancy: 0.2696
- The information below is about IL_3LQX_002
- Detailed Annotation
- tSH-tHW-tHS-cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_35186.2
- Basepair signature
- cWW-tSH-tHW-L-R-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6GZQ|1|A2|C|762
6GZQ|1|A2|A|763
6GZQ|1|A2|A|764
6GZQ|1|A2|A|765
6GZQ|1|A2|C|766
6GZQ|1|A2|C|767
*
6GZQ|1|A2|G|781
6GZQ|1|A2|G|782
6GZQ|1|A2|G|783
6GZQ|1|A2|U|784
6GZQ|1|A2|A|785
6GZQ|1|A2|G|786
Current chains
- Chain A2
- 16S ribosomal RNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain K2
- 30S ribosomal protein S11
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