IL_6GZQ_123

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GAG*CUAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_123 not in the Motif Atlas

Geometric match to IL_4V9F_053

Geometric discrepancy: 0.3662

The information below is about IL_4V9F_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30659.1

Basepair signature

cWW-L-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6GZQ|1|A2|G|922
6GZQ|1|A2|A|923
6GZQ|1|A2|G|924
*
6GZQ|1|A2|C|1215
6GZQ|1|A2|U|1216
6GZQ|1|A2|A|1217
6GZQ|1|A2|C|1218

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain I2

30S ribosomal protein S9

Chain M2

30S ribosomal protein S13

Chain U2

30S ribosomal protein Thx