IL_6GZQ_133

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_133 not in the Motif Atlas

Geometric match to IL_4V88_465

Geometric discrepancy: 0.2324

The information below is about IL_4V88_465

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64928.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

263

Unit IDs

6GZQ|1|A2|G|1387
6GZQ|1|A2|U|1388
6GZQ|1|A2|C|1389
*
6GZQ|1|A2|G|1471
6GZQ|1|A2|U|1472
6GZQ|1|A2|C|1473

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain V2

Ribosome hibernation promoting factor