IL_6GZQ_137

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_137 not in the Motif Atlas

Homologous match to IL_4LFB_062

Geometric discrepancy: 0.1812

The information below is about IL_4LFB_062

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.6

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

6GZQ|1|A2|C|1413
6GZQ|1|A2|G|1414
6GZQ|1|A2|A|1415
6GZQ|1|A2|A|1416
6GZQ|1|A2|G|1417
*
6GZQ|1|A2|C|1443
6GZQ|1|A2|G|1444
6GZQ|1|A2|A|1445
6GZQ|1|A2|G|1446

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain O1

50S ribosomal protein L19

Chain T2

30S ribosomal protein S20