IL_6GZQ_144
3D structure
- PDB id
- 6GZQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- CGAUGGUAC*GGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZQ_144 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.1327
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6GZQ|1|B1|C|73
6GZQ|1|B1|G|74
6GZQ|1|B1|A|75
6GZQ|1|B1|U|76
6GZQ|1|B1|G|77
6GZQ|1|B1|G|78
6GZQ|1|B1|U|79
6GZQ|1|B1|A|80
6GZQ|1|B1|C|81
*
6GZQ|1|B1|G|100
6GZQ|1|B1|G|101
6GZQ|1|B1|A|102
6GZQ|1|B1|G|103
6GZQ|1|B1|A|104
6GZQ|1|B1|G|105
6GZQ|1|B1|U|106
6GZQ|1|B1|A|107
6GZQ|1|B1|G|108
Current chains
- Chain B1
- 5S ribosomal RNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain L1
- 50S ribosomal protein L16
- Chain U1
- 50S ribosomal protein L25
Coloring options: