IL_6GZQ_159

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZQ_159 not in the Motif Atlas

Homologous match to IL_4WF9_064

Geometric discrepancy: 0.1611

The information below is about IL_4WF9_064

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

6GZQ|1|A1|G|1715
6GZQ|1|A1|G|1716
6GZQ|1|A1|A|1717
6GZQ|1|A1|A|1718
*
6GZQ|1|A1|U|2017
6GZQ|1|A1|C|2018

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L3

Chain J1

50S ribosomal protein L14